#open source

5 posts tagged with open source.

Interactive tools May 25, 2026

Codon Optimizer: free, open codon optimization with constraints

Paste a CDS or protein, pick a host organism + real constraints (avoid restriction sites, GC bounds, no homopolymers), and get an optimized DNA sequence ready for synthesis ordering. No login required.

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Interactive tools May 25, 2026

Structure Explorer: visualize any PDB or AlphaFold model in your browser

A free, embeddable 3D molecular structure viewer for any PDB entry or AlphaFold prediction — powered by Mol*, the same engine used by RCSB PDB, PDBe, and the AlphaFold Database.

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Interactive tools May 25, 2026

Plasmid Map Renderer: free, no-login plasmid map maker

Paste or upload a GenBank file, get a publication-quality plasmid map (linear or circular) you can download as SVG. Powered by the open-source DNA Features Viewer.

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Technical articles May 21, 2026

Open-source cellular image analysis in 2026: a field map of the tools that matter

A practical field map of the open-source tools shaping cellular image analysis in 2026 — CellProfiler, Fiji, ilastik, Cellpose, StarDist, Mesmer, Omnipose, Napari, and what foundation models are changing. With a quick-pick decision matrix.

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Interactive tools November 30, 2025

Active repository: open-source cellular image analysis software

An actively maintained, searchable database of open-source tools for biological cellular image and time-lapse analysis — ranked by GitHub stars, recent publications, and historical popularity.

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